Stubbe Symposium
MIT
July, 2008

honoring
Professor JoAnne Stubbe


To commemorate this occasion and the sucessful scientific career preceeding it, a sculpture of aminoimidazole ribonucleotide (AIR) was commissioned and presented by Dr. Erik Meyer.  In 1999, A new intermediate and two new enzymatic activities in the purine biosynthetic pathway in prokaryotes were reported
(1).



Atomic coordinates(2) from the X-ray crystal structure (1D7A.PDB) were used to create a scaled molecular model.


An appropriate slab (20 x 30 x 8 cm3) of seasoned oak was selected and mounted for milling.

oak slab



The atomic coordinates of the substrate adduct found in the Protein Data Bank (1D7A.PDB) together with orientation and setup parameters appropriate for he slab were input to program SCULPT, which provided "G code" for a CNC milling machine in the Molecular Sculptures shop at Taos, NM (3).


Both faces of the slab were milled in a 2-step process, first removing wood above the atomic surfaces in a lateral motion (G01), followed by rotational carving of descending planes (G03) to reveal the three-dimensional surface of the molecular model.



In order to obtain a three-dimensional model, the partially carved model was first stabilized in preparation for the loss of lateral support and the slab was flipped prior to carving the reverse side. The lateral forces of the CNC milling machine are considerable and the emerging sculpture would become unstable if not supported. In carving the reverse side,  it is essential that the structural origin and axis of rotation remain unchanged; this was satisfactorily obtained.



A citation and reference was inscribed.



After light sanding, the sculpture was finished with multiple coats of polyurethane spar varnish.


The cutting tool path is depicted:






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(1) Evidence for the Direct Transfer of the Carboxylate of N5-Carboxyaminoimidazole Ribonucleotide (N5-CAIR) To Generate 4-Carboxy-5-aminoimidazole
Ribonucleotide Catalyzed by Escherichia coli PurE, an N5-CAIR Mutase;
Erik Meyer, T. Joseph Kappock, Chukwunenye Osuji, and JoAnne Stubbe;  Biochemistry (1999), 38, 3012-3018

(2)  Crystal structure of Escherichia coli PurE, an unusual mutase in the purine biosynthetic pathway
I.I.Mathews,T.J.Kappock,J.Stubbe,S.E.Ealick;  Structure (1999)  7: 1395

(3) Supported in part by a grant from the U.S. National Science Foundation through the University of New Mexico - Taos.

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E. Meyer fecit © 2008